#!/bin/bash ## Copyright (c) 2015 Rodolphe Breard ## ## This program is free software: you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation, either version 3 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program. If not, see . ## set -euo pipefail IFS=$'\n\t' version () { echo "VCF Compressor 0.1.0-dev" exit 0 } usage () { exit_status="${1:-1}" echo "Usage: vcf_compressor [OPTION]... VCF_FILE" echo "" echo "Options:" echo " -o, --output" echo " --version" echo " -h, --help" exit "$exit_status" } compress_photo () { line="$1" prefix=$(echo "$line" | cut -d ":" -f1) picture=$(echo "$line" | cut -d ":" -f2 | base64 -d | convert "-" -quality 50 -resize "300x300>" "-" | base64 -w0) echo "$prefix:$picture" } process_line () { line="$1" echo "$line" | egrep "^PHOTO;" >/dev/null 2>&1 if [ $? -eq 0 ]; then compress_photo "$line" else echo "$line" fi } input_file="" output_file="" while :; do test $# -gt 0 || break case "$1" in -o|--output) if [ -n "$2" ]; then output_file="$2" shift 2 continue else usage fi ;; --version) version ;; -h|--help) usage 0 ;; *) if [ -z "$input_file" ]; then input_file="$1" shift continue else usage fi ;; esac done test -z "$input_file" && usage if [ ! -f "$input_file" ]; then echo "$input_file: file not found" exit 1 fi if [ -z "$output_file" ]; then dir=$(dirname "$input_file") name=$(basename "$input_file" ".vcf") output_file="$dir/$name.new.vcf" fi echo -n > "$output_file" while IFS='' read -r line || [[ -n "$line" ]]; do line=$(process_line "$line") echo "$line" >> "$output_file" done < "$input_file"